diff --git a/anatomical_map.json b/anatomical_map.json index f69d476..a7acca9 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -83,6 +83,10 @@ "term": "ILX:0795055", "name": "lower ureter" }, + "urinary_23": { + "term": "UBERON:0002366", + "name": "bulbo-urethral gland" + }, "cardio_1": { "term": "UBERON:0004535", "name": "cardiovascular system" @@ -647,10 +651,6 @@ "term": "UBERON:0001832", "name": "Sublingual gland" }, - "digestive_83": { - "term": "UBERON:0002059", - "name": "Submandibular ganglion" - }, "digestive_87": { "term": "UBERON:0000483", "name": "epithelium" @@ -759,6 +759,26 @@ "term": "UBERON:0015716", "name": "epithelium of rectum" }, + "digestive_117": { + "term": "UBERON:0001182", + "name": "superior mesenteric artery" + }, + "digestive_118": { + "term": "UBERON:0006637", + "name": "celiac trunk" + }, + "digestive_119": { + "term": "ILX:0793739", + "name": "Nerve fiber from submandibular ganglion to sublingual gland" + }, + "digestive_120": { + "term": "ILX:0793737", + "name": "Nerve fiber from submandibular ganglion to submandibular gland" + }, + "digestive_121": { + "term": "ILX:0793738", + "name": "Nerve fiber from submandibular ganglion to mouth mucosa" + }, "reproductive_1": { "term": "UBERON:0000995", "name": "uterus" @@ -836,8 +856,8 @@ "name": "Epithelium of Vagina" }, "reproductive_20": { - "term": "UBERON:0009853", - "name": "Body of Uterus" + "term": "ILX:0794769", + "name": "Upper uterine segment" }, "reproductive_21": { "term": "UBERON:0001981", @@ -882,6 +902,34 @@ "reproductive_33": { "term": "UBERON:0011183", "name": "corpus spongiosum of penis" + }, + "reproductive_34": { + "term": "ILX:0794767", + "name": "smooth muscle of the upper uterus" + }, + "reproductive_35": { + "term": "ILX:0794765", + "name": "blood vessel of the upper uterus" + }, + "reproductive_36": { + "term": "ILX:0794770", + "name": "lower uterine segment" + }, + "reproductive_37": { + "term": "ILX:0794768", + "name": "smooth muscle of the lower uterus" + }, + "reproductive_38": { + "term": "ILX:0794766", + "name": "blood vessel of the lower uterus" + }, + "reproductive_39": { + "term": "ILX:0794731", + "name": "smooth muscle of the cervix" + }, + "reproductive_40": { + "term": "ILX:0794738", + "name": "blood vessel of the cervix" }, "muscle_1": { "term": "ILX:0738319", diff --git a/connectivity_terms.json b/connectivity_terms.json index 20241e9..9760a8d 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -12,19 +12,6 @@ ] ] }, - { - "id": [ - "ILX:0738291", - [] - ], - "name": "T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain ", - "aliases": [ - [ - "UBERON:0002441", - [] - ] - ] - }, { "id": [ "UBERON:0016578", @@ -156,10 +143,6 @@ "UBERON:0005488", [] ], - [ - "ILX:0794732", - [] - ], [ "UBERON:0035772", [] @@ -180,26 +163,10 @@ "UBERON:0002010", [] ], - [ - "UBERON:0005734", - [ - "UBERON:0006637" - ] - ], - [ - "UBERON:0005734", - [ - "UBERON:0001182" - ] - ], [ "UBERON:0018676", [] ], - [ - "UBERON:0011926", - [] - ], [ "ILX:0795513", [] @@ -269,20 +236,6 @@ ] ] }, - { - "id": [ - "UBERON:0005364", - [ - "UBERON:0005363" - ] - ], - "aliases": [ - [ - "UBERON:0003535", - [] - ] - ] - }, { "id": [ "UBERON:0016580", @@ -297,47 +250,6 @@ ] ] }, - { - "id": [ - "ILX:0793141", - [] - ], - "name": "urethral rhabdosphincter", - "aliases": [ - [ - "UBERON:0004917", - [] - ], - [ - "UBERON:0002366", - [] - ] - ] - }, - { - "id": [ - "ILX:0786272", - [] - ], - "aliases": [ - [ - "ILX:0793619", - [] - ] - ] - }, - { - "id": [ - "ILX:0786722", - [] - ], - "aliases": [ - [ - "ILX:0793618", - [] - ] - ] - }, { "id": [ "UBERON:0006458", @@ -351,45 +263,6 @@ ] ] }, - { - "id": [ - "ILX:0786141", - [] - ], - "name": "Fifth thoracic ganglion ", - "aliases": [ - [ - "ILX:0793335", - [] - ] - ] - }, - { - "id": [ - "ILX:0789947", - [] - ], - "name": "Sixth thoracic ganglion", - "aliases": [ - [ - "ILX:0793336", - [] - ] - ] - }, - { - "id": [ - "ILX:0786228", - [] - ], - "name": "Second thoracic ganglion", - "aliases": [ - [ - "ILX:0793617", - [] - ] - ] - }, { "id": [ "UBERON:0006459", @@ -467,32 +340,6 @@ ] ] }, - { - "id": [ - "UBERON:0001832", - [] - ], - "name": "sublingual gland", - "aliases": [ - [ - "ILX:0793739", - [] - ] - ] - }, - { - "id": [ - "UBERON:0001736", - [] - ], - "name": "submandibular gland", - "aliases": [ - [ - "ILX:0793737", - [] - ] - ] - }, { "id": [ "UBERON:0001723", @@ -500,17 +347,9 @@ ], "name": "tongue", "aliases": [ - [ - "UBERON:0003721", - [] - ], [ "UBERON:0003729", [] - ], - [ - "ILX:0793738", - [] ] ] }, @@ -539,19 +378,6 @@ ] ] }, - { - "id": [ - "UBERON:0005303", - [] - ], - "name": "hypogastric nerve", - "aliases": [ - [ - "ILX:0793803", - [] - ] - ] - }, { "id": [ "UBERON:0000992", @@ -629,6 +455,10 @@ [ "ILX:0793884", [] + ], + [ + "ILX:0793803", + [] ] ] }, @@ -711,23 +541,6 @@ [ "ILX:0793882", [] - ], - [ - "UBERON:0007716", - [] - ] - ] - }, - { - "id": [ - "UBERON:0005453", - [] - ], - "name": "inferior mesenteric ganglion", - "aliases": [ - [ - "UBERON:0035770", - [] ] ] }, @@ -800,10 +613,6 @@ [ "ILX:0793817", [] - ], - [ - "UBERON:0007715", - [] ] ] }, @@ -889,53 +698,6 @@ ] ] }, - { - "id": [ - "UBERON:0009853", - [] - ], - "name": "body of uterus", - "aliases": [ - [ - "ILX:0794769", - [] - ], - [ - "ILX:0794767", - [] - ] - ] - }, - { - "id": [ - "UBERON:0000002", - [] - ], - "name": "uterine cervix", - "aliases": [ - [ - "ILX:0794770", - [] - ], - [ - "ILX:0794768", - [] - ] - ] - }, - { - "id": [ - "UBERON:0004223", - [] - ], - "name": "smooth muscle/vagina", - "aliases": [ - [ - "ILX:0794731", - [] - ] - ] - }, { "id": [ "UBERON:0001981", @@ -962,46 +724,12 @@ "UBERON:0006608", [] ], - [ - "ILX:0793809", - [] - ], [ "UBERON:0008323", [] ] ] }, - { - "id": [ - "UBERON:0001981", - ["UBERON:0000002"] - ], - "name": "blood vessel/uterine cervix", - "aliases": [ - [ - "ILX:0794738", - [] - ], - [ - "ILX:0794766", - [] - ] - ] - }, - { - "id": [ - "UBERON:0001981", - ["UBERON:0009853"] - ], - "name": "blood vessel/body of uterus", - "aliases": [ - [ - "ILX:0794765", - [] - ] - ] - }, { "id": [ "UBERON:0006463", @@ -1045,19 +773,6 @@ ] ] }, - { - "id": [ - "ILX:0793832", - [] - ], - "name": "Ovarian Nerve Plexus", - "aliases": [ - [ - "ILX:0793822", - [] - ] - ] - }, { "id": [ "UBERON:0018680", @@ -1451,10 +1166,6 @@ [ "UBERON:0004820", [] - ], - [ - "UBERON:0001279", - [] ] ] }, @@ -1492,6 +1203,10 @@ [ "UBERON:0015423", [] + ], + [ + "UBERON:0001279", + [] ] ] }, @@ -1584,82 +1299,9 @@ [ "ILX:0794853", [] - ] - ] - }, - { - "id": [ - "UBERON:0006118", - [] - ], - "name": "lamina I of gray matter of spinal cord", - "aliases": [ - [ - "ILX:0795026", - [] - ], - [ - "ILX:0795027", - [] - ], - [ - "ILX:0795028", - [] - ], - [ - "ILX:0795029", - [] - ], - [ - "ILX:0795030", - [] - ], - [ - "ILX:0795045", - [] - ], - [ - "ILX:0795041", - [] - ], - [ - "ILX:0795046", - [] - ], - [ - "ILX:0795043", - [] - ], - [ - "ILX:0795047", - [] - ], - [ - "ILX:0795042", - [] - ], - [ - "ILX:0795040", - [] - ], - [ - "ILX:0795023", - [] - ], - [ - "ILX:0795024", - [] - ], - [ - "ILX:0795025", - [] ], [ - "ILX:0795031", - [] - ], - [ - "ILX:0795044", + "UBERON:0003535", [] ] ] @@ -1969,6 +1611,21 @@ ] ] }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006454" + ] + ], + "name": "gray matter of spinal cord/sixth thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795040", + [] + ] + ] + }, { "id": [ "UBERON:0002315", @@ -1981,6 +1638,14 @@ [ "ILX:0796498", [] + ], + [ + "ILX:0795041", + [] + ], + [ + "ILX:0795023", + [] ] ] }, @@ -1996,6 +1661,14 @@ [ "ILX:0795032", [] + ], + [ + "ILX:0795042", + [] + ], + [ + "ILX:0795024", + [] ] ] }, @@ -2011,6 +1684,14 @@ [ "ILX:0795033", [] + ], + [ + "ILX:0795043", + [] + ], + [ + "ILX:0795025", + [] ] ] }, @@ -2026,6 +1707,14 @@ [ "ILX:0795034", [] + ], + [ + "ILX:0795026", + [] + ], + [ + "ILX:0795044", + [] ] ] }, @@ -2041,6 +1730,14 @@ [ "ILX:0795035", [] + ], + [ + "ILX:0795027", + [] + ], + [ + "ILX:0795045", + [] ] ] }, @@ -2056,6 +1753,14 @@ [ "ILX:0795036", [] + ], + [ + "ILX:0795028", + [] + ], + [ + "ILX:0795046", + [] ] ] }, @@ -2071,6 +1776,10 @@ [ "ILX:0795037", [] + ], + [ + "ILX:0795047", + [] ] ] }, @@ -2086,6 +1795,10 @@ [ "ILX:0795038", [] + ], + [ + "ILX:0795029", + [] ] ] }, @@ -2101,6 +1814,25 @@ [ "ILX:0795039", [] + ], + [ + "ILX:0795030", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006449" + ] + ], + "name": "gray matter of spinal cord/third lumbar spinal cord segment", + "aliases": [ + [ + "ILX:0795031", + [] ] ] }, diff --git a/pig_flatmap.svg b/pig_flatmap.svg index db9aa61..80486fc 100644 --- a/pig_flatmap.svg +++ b/pig_flatmap.svg @@ -716,19 +716,15 @@ .id(S50_C1) - + .id(S50_C2) - - - + .id(S50_C3) - + .id(S50_C4) - - - + .id(S50_C5) @@ -774,99 +770,42 @@ .id(S50_T11) - - .id(S50_T12-1) - - .id(S50_T12) - - + + .id(S50_T12) + .id(S50_T13) - - .id(S50_L1-1) - - .id(S50_L1) - - - - .id(S50_L2-1) - - .id(S50_L2) - - - - - - .id(S50_L3-1) - - .id(S50_L3) - - - - .id(S50_L4-1) - - .id(S50_L4) - - - - - + + .id(S50_L1) + + + .id(S50_L2) + + + .id(S50_L3) + + + .id(S50_L4) + + .id(S50_L5) - - - - - - + + .id(S50_L6) - - - - - - - - - - .id(S50_S1-1) - - .id(S50_S1) - - - - - - - .id(S50_S2-1) - - .id(S50_S2) - - - - - - - - - - + + + .id(S50_S1) + + + .id(S50_S2) + + .id(S50_S3) - - .id(S50_S3-1) - - - - - - - + + .id(S50_S4) - - .id(S50_S4-1) - - - + dorsal_root_of_spinal_cord @@ -22863,7 +22802,10 @@ .id(digestive_71-1) - + + .id(digestive_111-1) + + .id(digestive_72-1) @@ -22884,8 +22826,8 @@ .id(digestive_81-1) - - .id(digestive_83-1) + + .id(ganglion_39-1) .id(digestive_91-1) @@ -22900,7 +22842,22 @@ .id(digestive_88-1) - .id(digestive_92-1) + .id(digestive_92-1) + + + .id(digestive_117-1) + + + .id(digestive_118-1) + + + .id(digestive_119-1) + + + .id(digestive_120-1) + + + .id(digestive_121-1) @@ -22942,9 +22899,6 @@ .id(reproductive_10-1) - - .id(reproductive_12-1) - .id(reproductive_13-1) @@ -22966,12 +22920,33 @@ .id(reproductive_19-1) - + .id(reproductive_20-1) - - - .id(reproductive_21-1) - + + .id(reproductive_34-1) + + + .id(reproductive_35-1) + + + + .id(reproductive_12-1) + + .id(reproductive_39-1) + + + .id(reproductive_40-1) + + + + .id(reproductive_36-1) + + .id(reproductive_37-1) + + + .id(reproductive_38-1) + + respiratory_labels @@ -23158,6 +23133,9 @@ .id(urinary_19-1) + + .id(urinary_23-1) + @@ -23329,9 +23307,6 @@ .id(digestive_112-1) - - .id(digestive_111-1) - .id(digestive_5-1) @@ -23422,9 +23397,6 @@ .id(S46_S4) - - .id(ganglion_1-1) - .id(ganglion_2-1) @@ -23551,7 +23523,7 @@ .id(plexus_17-1) - + .id(plexus_18-1) @@ -23569,6 +23541,9 @@ .id(plexus_24-1) + + .id(plexus_25-1) + Nodes @@ -24511,6 +24486,15 @@ .id(cardiac_interganglionic_c) + + .id(lingual_c) + + + .id(clitoral_cavernous_c) + + + .id(superior_ovarian_nerve_c) + \ No newline at end of file diff --git a/properties.json b/properties.json index 3bb3c11..fea346f 100644 --- a/properties.json +++ b/properties.json @@ -1772,133 +1772,128 @@ "name": "Gray communicating ramus of fourth sacral nerve" }, "S50_C1": { - "class": "spinal_50" + "models": "ILX:0788141", + "name": "First cervical nerve" }, "S50_C2": { - "class": "spinal_50" + "models": "ILX:0785476", + "name": "Second cervical nerve" }, "S50_C3": { - "class": "spinal_50" + "models": "ILX:0790034", + "name": "Third cervical nerve" }, "S50_C4": { - "class": "spinal_50" + "models": "ILX:0792861", + "name": "Fourth cervical nerve" }, "S50_C5": { - "class": "spinal_50" + "models": "ILX:0791493", + "name": "Fifth cervical nerve" }, "S50_C6": { - "class": "spinal_50" + "models": "ILX:0787473", + "name": "Sixth cervical nerve" }, "S50_C7": { - "class": "spinal_50" + "models": "ILX:0789608", + "name": "Seventh cervical nerve" }, "S50_C8": { - "class": "spinal_50" + "models": "UBERON:0000962", + "name": "Eighth cervical nerve" }, "S50_L1": { - "class": "spinal_50" - }, - "S50_L1-1": { "models": "ILX:0788972", "name": "First lumbar nerve" }, "S50_L2": { - "class": "spinal_50" - }, - "S50_L2-1": { "models": "ILX:0786362", "name": "Second lumbar nerve" }, "S50_L3": { - "class": "spinal_50" - }, - "S50_L3-1": { "models": "ILX:0789374", "name": "Third lumbar nerve" }, "S50_L4": { - "class": "spinal_50" - }, - "S50_L4-1": { "models": "ILX:0788896", "name": "Fourth lumbar nerve" }, "S50_L5": { - "class": "spinal_50" + "models": "ILX:0787261", + "name": "Fifth lumbar nerve" }, "S50_L6": { - "class": "spinal_50" + "models": "UBERON:0009624", + "name": "Sixth lumbar nerve" }, "S50_S1": { - "class": "spinal_50" - }, - "S50_S1-1": { "models": "ILX:0790504", "name": "First sacral nerve" }, "S50_S2": { - "class": "spinal_50" - }, - "S50_S2-1": { "models": "ILX:0787528", "name": "Second sacral nerve" }, "S50_S3": { - "class": "spinal_50" - }, - "S50_S3-1": { "models": "ILX:0791971", "name": "Third sacral nerve" }, "S50_S4": { - "class": "spinal_50" - }, - "S50_S4-1": { "models": "ILX:0792327", "name": "Fourth sacral nerve" }, "S50_T1": { - "class": "spinal_50" + "models": "ILX:0738397", + "name": "First thoracic nerve" }, "S50_T2": { - "class": "spinal_50" + "models": "ILX:0739243", + "name": "Second thoracic nerve" }, "S50_T3": { - "class": "spinal_50" + "models": "ILX:0739246", + "name": "Third thoracic nerve" }, "S50_T4": { - "class": "spinal_50" + "models": "ILX:0784755", + "name": "Fourth thoracic nerve" }, "S50_T5": { - "class": "spinal_50" + "models": "ILX:0792589", + "name": "Fifth thoracic nerve" }, "S50_T6": { - "class": "spinal_50" + "models": "ILX:0791122", + "name": "Sixth thoracic nerve" }, "S50_T7": { - "class": "spinal_50" + "models": "ILX:0789008", + "name": "Seventh thoracic nerve" }, "S50_T8": { - "class": "spinal_50" + "models": "ILX:0792754", + "name": "Eighth thoracic nerve" }, "S50_T9": { - "class": "spinal_50" + "models": "ILX:0789545", + "name": "Ninth thoracic nerve" }, "S50_T10": { - "class": "spinal_50" + "models": "ILX:0792933", + "name": "Tenth thoracic nerve" }, "S50_T11": { - "class": "spinal_50" + "models": "ILX:0791454", + "name": "Eleventh thoracic nerve" }, "S50_T12": { - "class": "spinal_50" - }, - "S50_T12-1": { "models": "ILX:0791046", "name": "Twelfth thoracic nerve" }, "S50_T13": { - "class": "spinal_50" + "models": "UBERON:0003726", + "name": "Thirteenth thoracic nerve" }, "S51_L6": { "class": "spinal_51" @@ -2059,6 +2054,12 @@ "type": "ganglion", "class": "auto-hide" }, + "ganglion_39-1": { + "models": "UBERON:0002059", + "name": "Submandibular ganglion", + "type": "ganglion", + "class": "auto-hide" + }, "body_6-1": { "class": "body_6" }, @@ -2547,9 +2548,6 @@ "digestive_82-1": { "class": "digestive_82" }, - "digestive_83-1": { - "class": "digestive_83" - }, "digestive_87-1": { "class": "digestive_87" }, @@ -2634,6 +2632,21 @@ "digestive_116-1": { "class": "digestive_116" }, + "digestive_117-1": { + "class": "digestive_117" + }, + "digestive_118-1": { + "class": "digestive_118" + }, + "digestive_119-1": { + "class": "digestive_119" + }, + "digestive_120-1": { + "class": "digestive_120" + }, + "digestive_121-1": { + "class": "digestive_121" + }, "endocrine_2-1": { "class": "endocrine_2" }, @@ -2797,6 +2810,27 @@ "reproductive_33-1": { "class": "reproductive_33" }, + "reproductive_34-1": { + "class": "reproductive_34" + }, + "reproductive_35-1": { + "class": "reproductive_35" + }, + "reproductive_36-1": { + "class": "reproductive_36" + }, + "reproductive_37-1": { + "class": "reproductive_37" + }, + "reproductive_38-1": { + "class": "reproductive_38" + }, + "reproductive_39-1": { + "class": "reproductive_39" + }, + "reproductive_40-1": { + "class": "reproductive_40" + }, "respiratory_10-1": { "class": "respiratory_10" }, @@ -3509,6 +3543,9 @@ "urinary_22-1": { "class": "urinary_22" }, + "urinary_23-1": { + "class": "urinary_23" + }, "ganglion_1-1": { "class": "ganglion_1" }, @@ -3587,6 +3624,12 @@ "type": "ganglion", "class": "auto-hide" }, + "plexus_25-1": { + "models": "ILX:0794732", + "name": "intermesenteric plexus", + "type": "ganglion", + "class": "auto-hide" + }, "label_5-1": { "class": "label_5" }, @@ -4070,6 +4113,18 @@ "type": "nerve", "models": "UBERON:0036216" }, + "lingual_c": { + "type": "nerve", + "models": "UBERON:0003721" + }, + "clitoral_cavernous_c": { + "type": "nerve", + "models": "ILX:0793809" + }, + "superior_ovarian_nerve_c": { + "type": "nerve", + "models": "ILX:0793822" + }, "ardell_1_c": { "type": "nerve" }, diff --git a/proxy_features.json b/proxy_features.json index 6935695..e9e7d44 100644 --- a/proxy_features.json +++ b/proxy_features.json @@ -33,5 +33,82 @@ "proxies": [ "UBERON:0016508" ] + }, + { + "feature": "ILX:0793617", + "name": "T2 sympathetic chain", + "proxies": [ + "ILX:0786228" + ] + }, + { + "feature": "ILX:0793618", + "name": "T3 sympathetic chain", + "proxies": [ + "ILX:0786722" + ] + }, + { + "feature": "ILX:0793619", + "name": "T4 sympathetic chain", + "proxies": [ + "ILX:0786272" + ] + }, + { + "feature": "ILX:0793335", + "name": "T5 sympathetic chain", + "proxies": [ + "ILX:0786141" + ] + }, + { + "feature": "ILX:0793336", + "name": "T6 sympathetic chain", + "proxies": [ + "ILX:0789947" + ] + }, + { + "feature": "UBERON:0002441", + "name": "cervicothoracic ganglion", + "proxies": [ + "ILX:0774266" + ] + }, + { + "feature": "UBERON:0035770", + "name": "inferior mesenteric nerve plexus", + "proxies": [ + "UBERON:0005453" + ] + }, + { + "feature": "UBERON:0007715", + "name": "thoracic subsegment of spinal cord", + "proxies": [ + "ILX:0793357" + ] + }, + { + "feature": "UBERON:0007716", + "name": "lumbar subsegment of spinal cord", + "proxies": [ + "UBERON:0006448" + ] + }, + { + "feature": "UBERON:0004917", + "name": "urethral sphincter", + "proxies": [ + "ILX:0793141" + ] + }, + { + "feature": "UBERON:0001780", + "name": "spinal nerve", + "proxies": [ + "ILX:0738397" + ] } ]