Since we plan to apply this package more broadly to other Xenium datasets, we want to build in a bit more flexibility. I will start working in the [flexibility](https://github.com/BayraktarLab/Xenium_NMF/tree/flexibility) branch and list improvements in this issue.
Since we plan to apply this package more broadly to other Xenium datasets, we want to build in a bit more flexibility.
I will start working in the flexibility branch and list improvements in this issue.