diffuse-encoder/pyproject.toml at main · BonnerLab/diffuse-encoder · GitHub

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[build-system]
    requires      = ["setuptools", "setuptools-scm"]
    build-backend = "setuptools.build_meta"

[project]
    name = "Test-Time Augmentation for Model-Brain Similarity"
    description = "Project investigating how we can utilize the Test-Time Augmentation to improve model-brain similarity"
    readme = "README.md"
    requires-python = ">=3.10"
    license = { file = "LICENSE" }
    authors = [{ name = "Yingqi Rong", email = "yrong12@jh.edu" }]
    keywords = ["Bonner Lab", "dimensionality", "visual cortex", "representations"]
    classifiers = ["Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", "Natural Language :: English", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering", "Typing :: Typed"]
    urls = { repository = "https://github.com/BonnerLab/diffuse-encoder"}
    dependencies = [
        "loguru",
        "spacy",
        "more-itertools",
        "GitPython",
        "tqdm",
        "numpy",
        "torch",
        "sentence-transformers",
        "pandas",
        "xarray",
        "netCDF4",
        "dask",
        "scipy",
        "umap-learn",
        "Pillow",
        "matplotlib",
        "seaborn",
        "colorcet",
        "svgutils",
        "scikit-learn",
        "nilearn",
        "notebook",
        "ipywidgets",
        "diffusers",
        "transformers",
        "accelerate",
        "scipy",
        "safetensors",
        "opencv-contrib-python",
        "pycocotools",
        "clip",
        "protobuf",
    ]
    dynamic = ["version"]

[project.optional-dependencies]
    dev = ["pylint", "black", "mypy", "types-requests", "pytest", "bandit", "tox", "sphinx", "jupytext", "line-profiler", "memory-profiler", "snakeviz"]

[tool.black]
    preview = true

[tool.mypy]
    namespace_packages          = true
    ignore_missing_imports      = true
    disallow_untyped_defs       = true
    check_untyped_defs          = true
    disallow_untyped_decorators = true

    # disallow_any_unimported = true
    # disallow_any_expr = true
    # disallow_any_decorated = true
    # disallow_any_explicit = true
    # disallow_any_generics = true
    # disallow_subclassing_any = true

    warn_redundant_casts = true
    warn_unused_ignores  = true
    warn_no_return       = true
    warn_return_any = true
    warn_unreachable = true

    allow_redefinition = true

[tool.jupytext.formats]
    "notebooks" = "ipynb"
    "scripts"   = "py:percent"

[tool.jupytext]
    notebook_metadata_filter = "-all"
    cell_metadata_filter     = "-all"