From 2637f02b0e29b28e6cb19c251e242c857cab4093 Mon Sep 17 00:00:00 2001
From: Heberto Mayorquin <h.mayorquin@gmail.com>
Date: Tue, 17 Mar 2026 10:09:33 -0600
Subject: [PATCH 1/4] Migrate test and docs extras to PEP 735 dependency groups

---
 .github/workflows/full_tests.yml         | 3 ++-
 .github/workflows/full_tests_codecov.yml | 3 ++-
 pyproject.toml                           | 4 ++--
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/full_tests.yml b/.github/workflows/full_tests.yml
index 15cda73e..b2d5b9c9 100644
--- a/.github/workflows/full_tests.yml
+++ b/.github/workflows/full_tests.yml
@@ -28,7 +28,8 @@ jobs:
     - name: Install package
       run: |
         python -m pip install --upgrade pip
-        pip install .[test]
+        pip install .
+        pip install --group test
     - name: Pytest
       run: |
         pytest -m "not library" -v
diff --git a/.github/workflows/full_tests_codecov.yml b/.github/workflows/full_tests_codecov.yml
index c48715ab..44614bd2 100644
--- a/.github/workflows/full_tests_codecov.yml
+++ b/.github/workflows/full_tests_codecov.yml
@@ -20,7 +20,8 @@ jobs:
     - name: Install package
       run: |
         python -m pip install --upgrade pip
-        pip install .[test]
+        pip install .
+        pip install --group test
     - name: Pytest
       run: |
         pytest --cov=probeinterface --cov-report xml:./coverage.xml
diff --git a/pyproject.toml b/pyproject.toml
index 0474a124..ad740eff 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -37,7 +37,7 @@ build-backend = "hatchling.build"
 [tool.hatch.build]
 sources = ["src"]
 
-[project.optional-dependencies]
+[dependency-groups]
 
 test = [
     "jsonschema",
@@ -47,7 +47,7 @@ test = [
     "scipy",
     "pandas",
     "h5py",
-    "zarr>=2.16.0,<3.0.0"
+    "zarr>=2.16.0,<3.0.0",
 ]
 
 docs = [

From a1d3811144fc0ab2994b3b9dc380ff5418fc8352 Mon Sep 17 00:00:00 2001
From: Heberto Mayorquin <h.mayorquin@gmail.com>
Date: Tue, 17 Mar 2026 10:43:47 -0600
Subject: [PATCH 2/4] read the docs

---
 .readthedocs.yaml | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index ea08c7d7..dd57770c 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -1,16 +1,14 @@
 version: 2
 
 build:
-  os: ubuntu-20.04
+  os: ubuntu-24.04
   tools:
     python: "3.10"
+  jobs:
+    install:
+      - pip install -U pip
+      - pip install .
+      - pip install --group docs
 
 sphinx:
   configuration: doc/conf.py
-
-python:
-  install:
-    - method: pip
-      path: .
-      extra_requirements:
-        - docs

From 90974906fe35378521e09dd0361fe40826ccbfb1 Mon Sep 17 00:00:00 2001
From: Heberto Mayorquin <h.mayorquin@gmail.com>
Date: Tue, 17 Mar 2026 10:49:14 -0600
Subject: [PATCH 3/4] pyproject add dev

---
 pyproject.toml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/pyproject.toml b/pyproject.toml
index ad740eff..27aa3fb0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -59,6 +59,14 @@ docs = [
     "pandas",
 ]
 
+dev = [
+    {include-group = "test"},
+    {include-group = "docs"},
+    "pre-commit",
+    "tqdm",  # used in resources/generate_cambridgeneurotech_library.py
+    "shapely",  # used in resources/generate_cambridgeneurotech_library.py
+]
+
 [tool.pytest.ini_options]
 markers = [
     "library",

From ffd77dd1e128cf5fed231a33b6ca409402ccf9a2 Mon Sep 17 00:00:00 2001
From: Heberto Mayorquin <h.mayorquin@gmail.com>
Date: Tue, 17 Mar 2026 11:37:24 -0600
Subject: [PATCH 4/4] remove pin on matpltolib

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 27aa3fb0..fa605272 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,7 +54,7 @@ docs = [
     "pillow",
     "sphinx-gallery",
     "sphinx_rtd_theme",
-    "matplotlib==3.2.2",
+    "matplotlib",
     "scipy",
     "pandas",
 ]