nlstools/NAMESPACE at main · lbbe-software/nlstools · GitHub

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### Imports
importFrom("stats", "coef", "confint", "df.residual", "fitted", "formula",
  "pnorm", "ppoints", "predict", "profile", "qf", "qnorm",
  "qqline", "qqnorm", "qt", "quantile", "resid", "residuals",
  "runif", "sd", "shapiro.test", "update", "vcov", "weights")
importFrom("grDevices", "terrain.colors")
importFrom("graphics", "abline", "boxplot", "contour", "hist", "image",
  "layout", "lines", "par", "plot", "points", "text")
importFrom("utils", "relist")


### Exports
# functions
export(preview, overview, plotfit)

export(nlsBoot)
S3method(summary, nlsBoot)
S3method(plot, nlsBoot)
S3method(print, nlsBoot)
export(nlsBootPredict)

export(nlsConfRegions)
S3method(plot, nlsConfRegions)
S3method(print, nlsConfRegions)

export(nlsContourRSS)
S3method(plot, nlsContourRSS)
S3method(print, nlsContourRSS)

export(nlsJack)
S3method(plot, nlsJack)
S3method(print, nlsJack)
S3method(summary, nlsJack)

export(nlsResiduals)
S3method(plot, nlsResiduals)
S3method(print, nlsResiduals)
export(test.nlsResiduals)

# Michaelis models
export(michaelis, compet_mich, non_compet_mich)

# Defunct functions
#export(geeraerd, geeraerd_without_Nres, geeraerd_without_Sl, mafart, albert, trilinear, bilinear_without_Nres, bilinear_without_Sl, baranyi, baranyi_without_Nmax, baranyi_without_lag, buchanan, buchanan_without_Nmax, buchanan_without_lag, gompertzm, jameson_buchanan, jameson_baranyi, jameson_without_lag, cpm_T, cpm_pH_4p, cpm_pH_3p, cpm_aw_3p, cpm_aw_2p, cpm_T_pH_aw)
#export(competition1, competition2, growthcurve1, growthcurve2, growthcurve3, growthcurve4, ross, survivalcurve1, survivalcurve2, survivalcurve3)

export(confint2)

#export(confint2)
#export(nls)

#####################################
##            Not Exported         ##
#####################################

## ******* defunct *******
## "albert"
## "baranyi"
## "baranyi_without_lag"
## "baranyi_without_Nmax"
## "bilinear_without_Nres"
## "bilinear_without_SI"
## "buchanan"
## "buchanan_without_lag"
## "buchanan_without_Nmax"
## "competition1"
## "competition2"
## "competitioncurve"
## "competitionmodels"
## "compet_mich"
## "cpm_aw_2p"
## "cpm_aw_3p"
## "cpm_pH_3p"
## "cpm_pH_4p"
## "cpm_T"
## "cpm_T_pH_aw"
## "geeraerd"
## "geeraerd_without_Nres"
## "geeraerd_without_SI"
## "gompertzm"
## "growthcurve1"
## "growthcurve2"
## "growthcurve3"
## "growthcurve4"
## "growthmodels"
## "jameson_baranyi"
## "jameson_buchanan"
## "jameson_without_lag"
## "mafart"
## "michaelis"
## "michaelismodels"
## "non_compet_mich"
## "ross"
## "secondary"
## "survivalcurve1"
## "survivalcurve2"
## "survivalcurve3"
## "survivalmodels"
## "trilinear"
## "vmkm"
## "vmkmki"