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Add MERSCOPE data conversion script from raw to spatialdata#50

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add-vzg-merscope-loader
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Add MERSCOPE data conversion script from raw to spatialdata#50
Fritze wants to merge 1 commit into
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add-vzg-merscope-loader

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@Fritze Fritze commented May 21, 2026

This is the conversion script that was used for generating spatialdata zarrs from MERSCOPE raw data.
See:
s3://hca-op-spatial/datasets/MERSCOPE_data/BreastCancerTMA/spatialdata_zarrs/
and
s3://hca-op-spatial/datasets/MERSCOPE_data/HumanBrain/spatialdata_zarrs/

This script does not use viash yet so I assume we will have to incorporate that to match the 10X loaders in this repo.

…al imaging dataset openproblems convention) for Vizgen datasets
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