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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 32 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 31 19

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 18 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 584 repositories
  • aind-pophys-pipeline Public

    2P planar optical physiology processing pipeline

    AllenNeuralDynamics/aind-pophys-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 3 1 Updated Mar 19, 2026
  • aind-hcr-data-loader Public

    Data loading for AIND HCR datasets (v1.0)

    AllenNeuralDynamics/aind-hcr-data-loader’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 0 Updated Mar 19, 2026
  • aind-hcr-qc Public

    Code to generate QC plots for HCR data

    AllenNeuralDynamics/aind-hcr-qc’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 19, 2026
  • aind-mesoscale-tools Public

    Package for loading and interacting with AIND mesoscale anatomy whole-brain data

    AllenNeuralDynamics/aind-mesoscale-tools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 19, 2026
  • Aind.Behavior.Gists Public

    A repository with a bunch of unorganized gists

    AllenNeuralDynamics/Aind.Behavior.Gists’s past year of commit activity
    Python 0 0 0 0 Updated Mar 19, 2026
  • aind-metadata-viz Public

    Website for public metadata visualization

    AllenNeuralDynamics/aind-metadata-viz’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Mar 19, 2026
  • harp.device.quad-dac Public

    0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC

    AllenNeuralDynamics/harp.device.quad-dac’s past year of commit activity
    C++ 0 MIT 0 32 2 Updated Mar 19, 2026
  • AllenNeuralDynamics/aind-behavior-camstim-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 19, 2026
  • ophys-slap2-analysis Public

    Data reduction, preprocessing, and analysis for SLAP2 microscopes

    AllenNeuralDynamics/ophys-slap2-analysis’s past year of commit activity
    Jupyter Notebook 3 2 2 2 Updated Mar 19, 2026
  • package-brain-atlas-assets Public

    Reorganize various brain atlas data assets into a standard organization and metadata convention.

    AllenNeuralDynamics/package-brain-atlas-assets’s past year of commit activity
    Python 0 MIT 0 4 2 Updated Mar 19, 2026

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