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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.8k 474

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 558 149

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 510 51

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 163 33

  5. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 124 44

  6. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 122 12

Repositories

Showing 10 of 33 repositories
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 25 MIT 9 3 2 Updated Apr 7, 2026
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto’s past year of commit activity
    Rust 42 BSD-3-Clause 2 11 1 Updated Apr 6, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 36 3 8 0 Updated Mar 31, 2026
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 124 MIT 44 5 6 Updated Mar 24, 2026
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 3,796 Apache-2.0 474 50 1 Updated Mar 20, 2026
  • stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    ArcInstitute/stack’s past year of commit activity
    Jupyter Notebook 119 17 2 0 Updated Mar 16, 2026
  • Wizards-Staff Public

    Calcium imaging analysis pipeline of outputs from Lizard-Wizard for the Arc Institute.

    ArcInstitute/Wizards-Staff’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 10, 2026
  • Lizard-Wizard Public

    Calcium imaging analysis Nextflow pipeline for the Arc Institute

    ArcInstitute/Lizard-Wizard’s past year of commit activity
    Python 3 MIT 0 1 0 Updated Mar 10, 2026
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 44 MIT 26 12 5 Updated Mar 8, 2026
  • ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    ArcInstitute/ScreenPro2’s past year of commit activity
    Python 32 7 12 (1 issue needs help) 0 Updated Mar 6, 2026

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