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@BAUDOTlab

Systems Biomedicine Team @AMU

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  1. KGATE KGATE Public

    Knowledge graph embedding library bridging encoders from PyG and decoders from TorchKGE

    Python 7 2

  2. scDataPipeline scDataPipeline Public

    Reusable standard single-cell RNA sequencing data analysis pipeline

    R 3

  3. Dream_Rare-X Dream_Rare-X Public

    Jupyter Notebook 2 1

  4. Human_fetal_heart_atlas Human_fetal_heart_atlas Public

    HTML 1

  5. MOGAMUN MOGAMUN Public

    Forked from elvanov/MOGAMUN

    R

  6. multixrank multixrank Public

    Forked from anthbapt/multixrank

    Python

Repositories

Showing 10 of 17 repositories
  • KGATE Public

    Knowledge graph embedding library bridging encoders from PyG and decoders from TorchKGE

    BAUDOTlab/KGATE’s past year of commit activity
    Python 7 MIT 2 21 (2 issues need help) 3 Updated Apr 20, 2026
  • teaching_material Public

    Centralised repo for shared teaching supports of the team.

    BAUDOTlab/teaching_material’s past year of commit activity
    HTML 0 0 3 0 Updated Apr 17, 2026
  • minkiPy Public

    minkiPy is a Python package for the differential analysis of gene spatial organisation in spatial transcriptomics data using Minkowski functionals and tensors.

    BAUDOTlab/minkiPy’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 2, 2026
  • KGATE_benchmark Public

    Benchmark code for the KGATE knowledge graph embedding library

    BAUDOTlab/KGATE_benchmark’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 3, 2026
  • Dream_Rare-X Public
    BAUDOTlab/Dream_Rare-X’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Mar 21, 2025
  • Human_fetal_heart_atlas Public
    BAUDOTlab/Human_fetal_heart_atlas’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Jan 10, 2025
  • gastruloid_timeserie_scRNA-seq Public
    BAUDOTlab/gastruloid_timeserie_scRNA-seq’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Nov 19, 2024
  • scDataPipeline Public

    Reusable standard single-cell RNA sequencing data analysis pipeline

    BAUDOTlab/scDataPipeline’s past year of commit activity
    R 3 MIT 0 9 2 Updated Nov 15, 2024
  • orsum Public Forked from ozanozisik/orsum
    BAUDOTlab/orsum’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Mar 28, 2023
  • ODAMNet Public Forked from MOohTus/ODAMNet

    Python package to study molecular relationships between environmental factors and rare diseases.

    BAUDOTlab/ODAMNet’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Mar 13, 2023
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