Issues

• [Bug]: MCP query_graph and shortest_path rebuild a copy of the whole graph on every call

  bug
  Graphify-Labs/graphify#4191 · Filter by author rohit-jsfreaky opened on Oct 7, 2026
  1

• [Bug]: Optional-grammar tests fail instead of skipping on a default uv sync

  bug
  Graphify-Labs/graphify#4190 · Filter by author yatharth1706 opened on Oct 7, 2026
  1

• [Bug]: --no-cluster graph.json carries extracted_sources (absolute input paths) and failed_sources

  bug
  Graphify-Labs/graphify#4188 · Filter by author rohit-jsfreaky opened on Oct 7, 2026
  1

• [Bug]: Windows console script (graphify.exe) always runs AST extraction on one core

  bug
  Graphify-Labs/graphify#4186 · Filter by author rohit-jsfreaky opened on Oct 7, 2026
  1

• [Bug]: after renaming/deleting an imported module, a warm update mints ids from the checkout path

  bug
  Graphify-Labs/graphify#4184 · Filter by author rohit-jsfreaky opened on Oct 7, 2026
  1

• [Bug]: --no-cluster graph.json keeps edges to undeclared nodes; markdown ones embed the checkout path

  bug
  Graphify-Labs/graphify#4182 · Filter by author rohit-jsfreaky opened on Oct 7, 2026
  1

• [Bug]: external import stubs outlive their last import (stamped _origin=semantic on reload)

  bug
  Graphify-Labs/graphify#4180 · Filter by author rohit-jsfreaky opened on Oct 7, 2026
  1

• [Bug]: Markdown links to a file name with a space ([x](My%20Note.md), [x](<My Note.md>)) produce no references edge

  Graphify-Labs/graphify#4177 · Filter by author Yyunozor opened on Oct 7, 2026
  1

• 0.9.77: update fails with "File name too long" on export default base64 string + tsconfig baseUrl

  Graphify-Labs/graphify#4166 · Filter by author bastiennoel93 opened on Oct 6, 2026
  1

• [Bug]: Cross-drive syntax-error warning can abort extraction on Windows

  Graphify-Labs/graphify#4147 · Filter by author oleksii-tumanov opened on Oct 6, 2026
  1

• Fortran: named generic interfaces are dropped, so calls to the generic name dangle

  Graphify-Labs/graphify#4141 · Filter by author rajatnagda45 opened on Oct 6, 2026
  1

• Java: methods and calls inside anonymous class bodies are dropped

  Graphify-Labs/graphify#4139 · Filter by author rajatnagda45 opened on Oct 6, 2026
  1

• Elixir: defdelegate function definitions are dropped

  Graphify-Labs/graphify#4132 · Filter by author rajatnagda45 opened on Oct 5, 2026
  1

• Scala: given...with instance methods leak to the file and collide with same-named trait methods

  Graphify-Labs/graphify#4130 · Filter by author rajatnagda45 opened on Oct 5, 2026
  1

• Julia: parametric type definitions (struct Box{T}, abstract type Shape{T}) are dropped

  Graphify-Labs/graphify#4128 · Filter by author rajatnagda45 opened on Oct 5, 2026
  1

• Julia: functions with a where clause are dropped entirely

  Graphify-Labs/graphify#4126 · Filter by author rajatnagda45 opened on Oct 5, 2026
  1

• [Bug]: graph.html renders nothing when a label contains an unclosed <!-- followed by <script

  bug
  Graphify-Labs/graphify#4124 · Filter by author tricode-online-admin opened on Oct 5, 2026
  1

• [Bug]: gemini silently omits most files in a single oversized chunk (token_budget=60000 default) — not truncation

  Graphify-Labs/graphify#4101 · Filter by author jkemp814 opened on Oct 5, 2026
  12

• feat: cache Graphify context outside the repository

  Graphify-Labs/graphify#4063 · Filter by author siddqamar opened on Oct 4, 2026
  1

• [Feature]: skill.md — "Do not skip steps" contradicts the documented skips; shouted MANDATORY Agent-tool line; API-key note stated twice

  good first issuehelp wanted
  Graphify-Labs/graphify#4061 · Filter by author nabki opened on Oct 4, 2026
  2

• [Bug]: ollama branch overwrites extra_body, so GRAPHIFY_DISABLE_THINKING and providers.json extra_body are silently inert; plus no JSON mode and no seed, so extraction is not reproducible (73 vs 34 nodes on identical input)

  Graphify-Labs/graphify#3988 · Filter by author Rasco94 opened on Oct 2, 2026
  1

• [Bug]: ollama + library path silently drops ~96% of edges: no source_file backfill, on_chunk_done fires after the checkpoint and without the chunk's allowlist, #2973 recovery is case-sensitive, and MAX_OUTPUT_TOKENS is inert

  Graphify-Labs/graphify#3982 · Filter by author Rasco94 opened on Oct 1, 2026
  3

• semantically_similar_to is scoped to one chunk, so similarity across chunks is never emitted, and plain string metrics miss it in a reconciliation pass

  Graphify-Labs/graphify#3948 · Filter by author jnrod03-rgb opened on Sep 30, 2026
  2

• extraction-spec has no rule for referencing nodes outside the chunk: agents copy id fragments or mint stub nodes, and replace-on-re-extract deletes real content

  Graphify-Labs/graphify#3947 · Filter by author jnrod03-rgb opened on Sep 30, 2026
  1

• --update: break down a mass change by top-level directory before dispatching extraction

  Graphify-Labs/graphify#3945 · Filter by author jnrod03-rgb opened on Sep 30, 2026
  1