Update copyrights and licenses

GeneticsCore/build.gradle

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2016-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 import org.labkey.gradle.util.BuildUtils;
 
 plugins {

GeneticsCore/resources/queries/assay.GenotypeAssay.Genotype/Data.js

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 var LABKEY = require("labkey");
 
 var triggerHelper = new org.labkey.GeneticsCore.GeneticsCoreTriggerHelper(LABKEY.Security.currentUser.id, LABKEY.Security.currentContainer.id, this.schemaName, 'Data');

GeneticsCore/resources/queries/assay.SSP_assay.SSP/Data.js

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 var LABKEY = require("labkey");
 
 var triggerHelper = new org.labkey.GeneticsCore.GeneticsCoreTriggerHelper(LABKEY.Security.currentUser.id, LABKEY.Security.currentContainer.id, this.schemaName, 'Data');

GeneticsCore/resources/queries/geneticscore/discordantCachedResults.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2024-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 SELECT
     COALESCE(t1.subjectId, t2.marker) as subjectId,
     COALESCE(t1.marker, t2.marker) as marker,

GeneticsCore/resources/queries/geneticscore/discordantSubjectIds.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2024-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 SELECT
     a.rowId,
     a.subjectId,

GeneticsCore/resources/queries/geneticscore/discordantSubjectIdsGrouped.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2024-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 SELECT
     a.subjectId,
     a.readsetSubjectId,

GeneticsCore/resources/queries/geneticscore/mhc_data.js

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 var LABKEY = require("labkey");
 
 function beforeInsert(row) {

GeneticsCore/resources/queries/geneticscore/mhc_data_source.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 -- This is the source query for aggregating MHC data into geneticscore.mhc_data
 
 SELECT

GeneticsCore/resources/queries/geneticscore/mhc_delete_source.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 SELECT
     q.RowPk as objectid,
     q.created,

GeneticsCore/resources/queries/study/dnaFlagSummary.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 -- NOTE: any changes to the logic the this query should also modify processingGeneticsBloodDraws.sql in ONPRC_Reports
 SELECT
   t.Id,

GeneticsCore/resources/queries/study/mhcFlagSummary.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 -- NOTE: any changes to the logic the this query should also modify processingGeneticsBloodDraws.sql in ONPRC_Reports
 SELECT
   d.Id,

GeneticsCore/resources/queries/study/parentageFlagSummary.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 -- NOTE: any changes to the logic the this query should also modify processingGeneticsBloodDraws.sql in ONPRC_Reports
 SELECT
   d.Id,

GeneticsCore/resources/schemas/dbscripts/postgresql/geneticscore-0.03-17.10.sql

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2011 LabKey Corporation
+ * Copyright (c) 2017-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/resources/schemas/dbscripts/postgresql/geneticscore-17.10-17.11.sql

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2011 LabKey Corporation
+ * Copyright (c) 2020-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/resources/schemas/dbscripts/postgresql/geneticscore-17.11-17.12.sql

@@ -1,2 +1,7 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 ALTER TABLE geneticscore.mhc_data ADD objectid ENTITYID;
 ALTER TABLE geneticscore.mhc_data ADD totalTests int;

GeneticsCore/resources/schemas/dbscripts/postgresql/geneticscore-17.12-17.13.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 ALTER TABLE geneticscore.mhc_data DROP CONSTRAINT PK_mhc_data;
 ALTER TABLE geneticscore.mhc_data ALTER COLUMN objectid SET NOT NULL;
 ALTER TABLE geneticscore.mhc_data ADD CONSTRAINT PK_mhc_data PRIMARY KEY (objectid);

GeneticsCore/resources/schemas/dbscripts/postgresql/geneticscore-17.13-17.14.sql

@@ -1 +1,6 @@
+/*
+ * Copyright (c) 2023-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 ALTER TABLE geneticscore.mhc_data ALTER COLUMN marker TYPE varchar(1000);

GeneticsCore/resources/schemas/dbscripts/sqlserver/geneticscore-0.03-17.10.sql

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2011 LabKey Corporation
+ * Copyright (c) 2017-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/resources/schemas/dbscripts/sqlserver/geneticscore-17.10-17.11.sql

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2011 LabKey Corporation
+ * Copyright (c) 2020-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/resources/schemas/dbscripts/sqlserver/geneticscore-17.11-17.12.sql

@@ -1,2 +1,7 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 ALTER TABLE geneticscore.mhc_data ADD objectid ENTITYID;
 ALTER TABLE geneticscore.mhc_data ADD totalTests int;

GeneticsCore/resources/schemas/dbscripts/sqlserver/geneticscore-17.12-17.13.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 ALTER TABLE geneticscore.mhc_data DROP CONSTRAINT PK_mhc_data;
 ALTER TABLE geneticscore.mhc_data ALTER COLUMN objectid entityid NOT NULL;
 GO

GeneticsCore/resources/schemas/dbscripts/sqlserver/geneticscore-17.13-17.14.sql

@@ -1 +1,6 @@
+/*
+ * Copyright (c) 2023-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 ALTER TABLE geneticscore.mhc_data ALTER COLUMN marker nvarchar(1000);

GeneticsCore/resources/schemas/geneticscore.xml

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
 
- * Copyright (c) 2011 LabKey Corporation
+ * Copyright (c) 2017-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/resources/web/geneticscore/buttons.js

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 Ext4.ns('GeneticsCore');
 
 GeneticsCore.buttons = new function(){

GeneticsCore/resources/web/geneticscore/window/ManageFlagsWindow.js

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 /**
  * @cfg dataRegion
  * @cfg subjectIds

GeneticsCore/src/org/labkey/GeneticsCore/GeneticsCoreController.java

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.labkey.GeneticsCore;
 
 import org.apache.logging.log4j.LogManager;

GeneticsCore/src/org/labkey/GeneticsCore/GeneticsCoreExpListener.java

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.labkey.GeneticsCore;
 
 import org.labkey.api.assay.AssayProvider;

GeneticsCore/src/org/labkey/GeneticsCore/GeneticsCoreManager.java

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2012 LabKey Corporation
+ * Copyright (c) 2013-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/src/org/labkey/GeneticsCore/GeneticsCoreModule.java

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2012 LabKey Corporation
+ * Copyright (c) 2013-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

GeneticsCore/src/org/labkey/GeneticsCore/GeneticsCoreTriggerHelper.java

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.labkey.GeneticsCore;
 
 

GeneticsCore/src/org/labkey/GeneticsCore/etl/ImportGeneticsCalculationsStep.java

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2024-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.labkey.GeneticsCore.etl;
 
 import org.apache.commons.lang3.StringUtils;

GeneticsCore/src/org/labkey/GeneticsCore/mhc/MhcTaskRef.java

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2021-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.labkey.GeneticsCore.mhc;
 
 import org.apache.commons.lang3.StringUtils;

GeneticsCore/src/org/labkey/GeneticsCore/notification/GeneticsCoreNotification.java

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.labkey.GeneticsCore.notification;
 
 import org.apache.logging.log4j.Logger;

HormoneAssay/build.gradle

@@ -1,3 +1,18 @@
+/*
+ * Copyright (c) 2016-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 import org.labkey.gradle.util.BuildUtils;
 
 plugins {

HormoneAssay/resources/assay/hormone/queries/Results Pivoted.sql

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2010-2012 LabKey Corporation
+ * Copyright (c) 2013-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
  */

HormoneAssay/resources/schemas/dbscripts/postgresql/hormoneassay-0.00-0.01.sql

@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2011 LabKey Corporation
+ * Copyright (c) 2013-2026 LabKey Corporation
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

HormoneAssay/resources/schemas/dbscripts/postgresql/hormoneassay-0.01-0.02.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2013-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 -- @SkipOnEmptySchemasBegin
 DELETE FROM hormoneassay.instruments WHERE instrument = 'Roche E411';
 INSERT INTO hormoneassay.instruments (instrument) VALUES ('Roche E411');