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[bot] Merge 25.11 to 26.3 (Conflicts)#1214

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github-actions[bot] merged 2 commits into
release26.3-SNAPSHOTfrom
26.3_fb_bot_merge_25.11
May 25, 2026
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[bot] Merge 25.11 to 26.3 (Conflicts)#1214
github-actions[bot] merged 2 commits into
release26.3-SNAPSHOTfrom
26.3_fb_bot_merge_25.11

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Automatic merge failed! Please merge 25.11 into 26.3_fb_bot_merge_25.11 and resolve conflicts manually.

git fetch
git checkout 26.3_fb_bot_merge_25.11
git reset --hard origin/release26.3-SNAPSHOT
git merge 90e063c373249a2cf93e87866ac6e28079ea9740 -m "Merge 25.11 to 26.3"

Resolve all conflicts (using IntelliJ or git mergetool)

git commit
git push --force

Approve all matching PRs simultaneously.
Approval will trigger automatic merge.
Verify all PRs before approving: https://internal.labkey.com/Scrumtime/Backlog/harvest-gitOpenPullRequests.view?branch=26.3_fb_bot_merge_25.11

…on (#1211)

* Extract TargetedMSHelper and add upgrade test for 26.3 schema migration

Extracts setupFolder(), selectFolderType(), and importData() from TargetedMSTest
into a new TargetedMSHelper class so the logic can be shared without subclassing.
Adds TargetedMSUpgradeTest to verify the targetedms-26.006-26.007 migration correctly
populates PeptideGroupCount, MoleculeGroupCount, and ProteinCount on existing runs.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* Split upgrade test into pre- and post-upgrade count checks

testPreUpgradeCounts queries columns available in 25.11 (Peptides, SmallMolecules,
Replicates) and runs on both setup and verify phases. testPostUpgradeCounts is
gated with @EarliestVersion("26.3") and Assume.assumeFalse(isUpgradeSetupPhase)
so it only runs on the new server after the 26.006-26.007 migration.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* Fix field names

* Not ready for Java 25 yet

* Fix annotations

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
@labkey-klum labkey-klum force-pushed the 26.3_fb_bot_merge_25.11 branch from 148d48a to 411e655 Compare May 25, 2026 18:17
@github-actions github-actions Bot merged commit 411e655 into release26.3-SNAPSHOT May 25, 2026
7 checks passed
@github-actions github-actions Bot deleted the 26.3_fb_bot_merge_25.11 branch May 25, 2026 20:16
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3 participants