Respect agent-specific project rules in cloned repos

[skulidropek]

Summary

• keep Codex project skills isolated by linking repo-local skill trees into ~/.codex/skills/.docker-git-project after clone
• let Claude use its native project-local rules from CLAUDE.md, .claude/settings.json, .claude/agents, and .mcp.json by starting it in the cloned repo
• let Gemini use its native project-local rules from GEMINI.md, .gemini/settings.json, .gemini/{commands,skills}, and .agents/skills by starting it in the cloned repo
• cover the generated entrypoint and apply flow with regression tests

Verification

• pnpm -C packages/lib build
• pnpm -C packages/lib exec vitest run tests/usecases/prepare-files.test.ts tests/usecases/apply.test.ts tests/core/templates.test.ts
• pnpm -C packages/app exec vitest run tests/docker-git/entrypoint-auth.test.ts

Closes #207

[skulidropek]

AI Session Backup

Commit: 328b9a7
Files: 1940 (35.01 MB)
Links: README | Manifest

git status

On branch issue-207
nothing to commit, working tree clean