1512 Generate ODE models from yaml template

[HenrZu]

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

• Given a configuration template (yaml,toml), we generate the C++ source files and also the python bindings for this model (+ Python example)
• Can be started via CLI or Python file

If need be, add additional information and what the reviewer should look out for in particular:

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

• Every addressed issue is linked (use the "Closes #ISSUE" keyword below).
• New code adheres to coding guidelines.
• No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.).
• Tests are added for new functionality and a local test run was successful (with and without OpenMP).
• Appropriate documentation within the code (Doxygen) for new functionality has been added in the code.
• Appropriate external documentation (ReadTheDocs) for new functionality has been added to the online documentation and checked in the preview.
• Proper attention to licenses, especially no new third-party software with conflicting license has been added.
• (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

• Corresponding issue(s) is/are linked and addressed.
• Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.).
• Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease).
• No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.).
• On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 97.38%. Comparing base (77e510d) to head (e6a9b52).
⚠️ Report is 6 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1518   +/-   ##
=======================================
  Coverage   97.38%   97.38%           
=======================================
  Files         188      188           
  Lines       16537    16619   +82     
=======================================
+ Hits        16104    16184   +80     
- Misses        433      435    +2     

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[mknaranja]

Thank you very much for this great feature. So far I have only gone through the documentation. I will try to check functionality and core code more closely but this could maybe help to improve the documentation,