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Achievement: QuickdrawAchievement: Pair Extraordinairex2Achievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: QuickdrawAchievement: Pair Extraordinairex2Achievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

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aofarrel/README.md

Pronouns he-slash-they Affiliation UC Santa Cruz Mycobacterium tuberculosis

Primarily working in Python and WDL for UC Santa Cruz on projects relating to tuberculosis.

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  1. DataBiosphere/analysis_pipeline_WDL DataBiosphere/analysis_pipeline_WDL Public

    Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.

    WDL 6 3

  2. myco myco Public

    Pipeline for decontaminating, profiling, and variant calling Mycobacterium tuberculosis complex (MBTC) samples

    PureBasic 3 6

  3. tree_nine tree_nine Public

    Put samples on an existing phylogenetic tree using UShER and (optionally) find clusters

    Python 3

  4. ranchero ranchero Public

    Metadata wrangling and standardization library with a focus on NCBI SRA metadata

    Python 1