Merge test#1
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Add alra.py file as created previously from the wrong branch.
removing from the incorrect task
Add alra to denoising task
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Test merge with my fork |
Correcting my name in README.md
Create Wagner_2018_zebrafish_embryo_CRISPR.py
Fix cli failing tests when metric returns 0.0 float
Codecov Report
@@ Coverage Diff @@
## method-add-predicting-chromatin-gex #1 +/- ##
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Coverage ? 89.11%
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Files ? 73
Lines ? 1498
Branches ? 90
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Hits ? 1335
Misses ? 134
Partials ? 29
Flags with carried forward coverage won't be shown. Click here to find out more. Continue to review full report at Codecov.
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Update README.md
Change to utilize alra.R support script.
Add support script alra.R
Changed comment to equal <80 characters in length
Remove scran pooling and log-cpm imports and shorten comment
Add method ALRA to denoising task
* Add SCOT method to multimodal data integration task * pre-commit * Fix flake things * pre-commit Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Add trustworthiness score * Address comments, add test * Fix test * Update README.md * Update README.md * Update README.md * Update README.md Co-authored-by: Daniel Burkhardt <burkhardt.d.b@gmail.com>
* Add preprocessing.py for dim red methods This file should contain standard pre-processing functions used to create variations on different methods * Add pre-processing function existing dim red methods Create a new PHATE variant using Scanpy pre-processing * Update dim red README to describe pre-processing * pre-commit * Pre-commit fixes * Move PHATE import inside function Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Daniel Burkhardt <burkhardt.d.b@gmail.com>
Codecov Report
@@ Coverage Diff @@
## method-add-predicting-chromatin-gex #1 +/- ##
======================================================================
Coverage ? 89.30%
======================================================================
Files ? 73
Lines ? 1533
Branches ? 90
======================================================================
Hits ? 1369
Misses ? 135
Partials ? 29
Flags with carried forward coverage won't be shown. Click here to find out more. Continue to review full report at Codecov.
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* Update alra.py Fix pre-processing and transformation back into the original space * pre-commit * Update alra.py * make sure necessary methods are imported Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Daniel Burkhardt <burkhardt.d.b@gmail.com>
Submission type
Testing
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