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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 88 58

  2. lsd lsd Public

    🌈

    Python 67 41

  3. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 38 4

  4. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 33 17

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 26 5

  6. linajea linajea Public

    Python 18 6

Repositories

Showing 10 of 86 repositories
  • funtracks Public

    A data model for cell tracking with actions, undo history, and more!

    funkelab/funtracks’s past year of commit activity
    Python 4 BSD-3-Clause 1 36 3 Updated Mar 17, 2026
  • motile_tracker Public

    An application for interactive for tracking with motile

    funkelab/motile_tracker’s past year of commit activity
    Python 10 BSD-3-Clause 5 99 4 Updated Mar 16, 2026
  • finn Public

    finn is (not) napari

    funkelab/finn’s past year of commit activity
    Python 4 BSD-3-Clause 2 14 3 Updated Mar 16, 2026
  • tarflow Public Forked from apple/ml-tarflow
    funkelab/tarflow’s past year of commit activity
    Python 0 MIT 30 0 0 Updated Mar 11, 2026
  • morphix Public
    funkelab/morphix’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 2, 2026
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph’s past year of commit activity
    Python 10 MIT 2 6 2 Updated Mar 2, 2026
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac’s past year of commit activity
    Python 2 MIT 0 6 2 Updated Mar 2, 2026
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    funkelab/gunpowder’s past year of commit activity
    Python 88 MIT 58 12 1 Updated Mar 2, 2026
  • funlib.geometry Public

    A package for Coordinates, Rois and common operations in Coordinate spaces

    funkelab/funlib.geometry’s past year of commit activity
    Python 1 MIT 4 0 0 Updated Feb 14, 2026
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    funkelab/funlib.persistence’s past year of commit activity
    Python 5 MIT 12 9 1 Updated Feb 14, 2026
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