VSOB4: Bioinformatics Course: Metagenome Analysis in One Health Practice From 16S to Shotgun

September 03rd-06th, 2025, ICISE, Gia Lai, Vietnam

General Information

• The official homepage of the VSOB4 Link
• The program of the VSOB4 can be found here: PDF
• Photos Google Photo Link
• Galaxy VSOB4 Link

Day 1

• Dr. Cuong Nguyen - Introduction to VSOB4 PDF
• Prof. Dr. Truong Nam Hai - Keynote 1: Introduction to Metagenomics and Applications in Agriculture PDF
• Dr. Nguyen Thuy Vy - Lecture 1: Metagenomics library preparation PDF
• Dr. Nguyen Thuy Vy - Keynote 2: Analysis of Gut Microbiome, Structure and Function in Vietnamese Adults PDF
• PhD. Candidate Pham Quang Huy - Lecture 2: Shotgun Metagenomics Analysis PDF

Day 2

• PhD. Candidate Pham Quang Huy - Lecture 2: Shotgun Metagenomics Analysis (continue)
• Link to Galaxy Training Material: Link

Day 3

• Dr. The-Hao Chung - 16S rRNA Amplicon Analysis PDF
• File Data File
• Link to RStudio on LOBI@CBAS server. This server will be down within 2 weeks.

Day 4

• Dr. Tran Thi Thanh Tam - Talk: Identifying fecal microbiota signatures of colorectal cancer in a Vietnamese cohort PDF
• Assoc. Prof. Dr. Nguyen Bao Quoc - Talk: Identification of diet resources of big-eyed bug Geocoris ochropterus (Fieber) (Hemiptera: Geocoridae) by multiplex PCR and shotgun metagenomic approaches PDF
• Dr. Cuong Nguyen - Lecture4: Data Visualization with R Lecture note (PDF), R Markdown (ZIP)