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    • Structure Prediction Tool for Antibody-Antigen Complexes
      Python
      0700Updated Apr 28, 2026Apr 28, 2026
    • Code and data for vaxpred project
      Python
      0000Updated Apr 14, 2026Apr 14, 2026
    • Python
      MIT License
      0000Updated Apr 14, 2026Apr 14, 2026
    • Python
      0700Updated Mar 17, 2026Mar 17, 2026
    • Sequence-based prediction of peptide-TCR interactions using paired chain data
      Python
      Other
      61310Updated Feb 2, 2026Feb 2, 2026
    • Code and guides for setting up apptainer containers on Gefion HPC to run AlphaFold, Chai, BepiPocket, Boltz, Boltzgen
      Shell
      1000Updated Jan 13, 2026Jan 13, 2026
    • Python
      0100Updated Nov 3, 2025Nov 3, 2025
    • AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg interfaces, and AbEpiTarget…
      Python
      53210Updated Oct 5, 2025Oct 5, 2025
    • AbAgIoU

      Public
      Computing the IoU metrics for evaluating the modelling accuracy of antibody-antigen complexes
      Python
      0000Updated Jun 3, 2025Jun 3, 2025
    • ImmunoMSA

      Public
      Repo containing code and workflows for creating MSA inputs for structural modelling (AlphaFold, Chai1, Boltz etc.)
      Python
      0000Updated May 9, 2025May 9, 2025
    • itrap

      Public
      Improved T-cell Receptor Antigen Pairing
      Python
      0301Updated Mar 11, 2025Mar 11, 2025
    • Installation guide with a little utilization code for protein language model ESM2
      Python
      0100Updated Nov 19, 2024Nov 19, 2024
    • Example data for AbEpiTope-1.0
      0000Updated Oct 12, 2024Oct 12, 2024
    • Repository for the neural networks part of (22125) Algorithms in Bioinformatics
      Jupyter Notebook
      MIT License
      0000Updated Jun 12, 2024Jun 12, 2024
    • NetTCR entries for the IMMREP 2023 kaggle competition
      Jupyter Notebook
      Other
      0000Updated Dec 20, 2023Dec 20, 2023
    • This repo contains the code to train and test NetTCR-2.1 models
      Python
      0100Updated Aug 23, 2023Aug 23, 2023
    • This repo contains the 10x Genomic datasets filtered using ATRAP and ICON denoising frameworks.
      0100Updated Jul 11, 2023Jul 11, 2023
    • This repository contains the model architectures and code used for training the models in the Master thesis by Mathias Fynbo Jensen
      Python
      0000Updated Mar 6, 2023Mar 6, 2023
    • Python
      0100Updated Sep 20, 2022Sep 20, 2022
    • NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
      Python
      123650Updated Mar 29, 2022Mar 29, 2022
    • TeX
      0200Updated Aug 12, 2021Aug 12, 2021
    • netTCR

      Public
      predicting peptide and TCR interaction
      Python
      GNU General Public License v3.0
      52040Updated Jan 27, 2021Jan 27, 2021
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