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Pull requests: samtools/htslib

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Pull requests list

Add Github actions builds for Linux and Mac OS
#2000 opened Apr 24, 2026 by daviesrob Member Loading…
fix(performance): Use bounded HTTP Range requests for indexed BAM queries
#1998 opened Apr 14, 2026 by TechIsCool Loading…
1
Add multi-region iterator support for tabix
#1997 opened Apr 6, 2026 by HeyangQin Loading…
4 tasks done
1
1
Add API functions to parse and format SEQ and QUAL fields
#1974 opened Nov 26, 2025 by jmarshall Member Loading…
@daviesrob
4
hts wide maxdepth limit check
#1965 opened Oct 30, 2025 by vasudeva8 Contributor • Draft
1
@whitwham
ISA-L compression support evaluation.
#1908 opened Apr 29, 2025 by rhpvorderman Contributor • Draft
2
Speed up of VCF parsing / writing with FORMAT fields.
#1081 opened May 28, 2020 by jkbonfield Contributor Loading…
4
sam_format1 : replace if/then with switch/case
#704 opened May 24, 2018 by lindenb Loading…
1
Add mmap hfile backend
#690 opened Apr 23, 2018 by ThomasHickman Contributor Loading…
12
Provide more informative error message when encountering unexpected n…
#689 opened Apr 22, 2018 by cinquin Contributor Loading…
2
Add hts_open_cb() interface which allows callback function used as data source
#647 opened Jan 10, 2018 by 38 Loading…
12
Abstract ref_to_m5 from cram_io
#589 opened Sep 8, 2017 by ThomasHickman Contributor Loading…
@jkbonfield
37
Added "make dist" and "make distcheck" targets.
#533 opened May 15, 2017 by jkbonfield Contributor Loading…
Add a flexible array member to the bam1_t struct to facilitate a BAM … breaks-ABI
#393 opened Jun 21, 2016 by nathanweeks Contributor Loading…
1
IAM role support enhancement
#362 opened Mar 28, 2016 by jpiper Contributor Loading…
6
[DISCUSS] Add HTS_PARSE_* parsing flags
#260 opened Aug 26, 2015 by jmarshall Member Loading… wishlist
12
for creating indexing file in samtools merge D2: Moderate P2: Desirable
#193 opened Mar 25, 2015 by ionzhangj8 Loading… wishlist
Support for mips/mipsel
#99 opened May 28, 2014 by azlicic Loading…
30
ProTip! What’s not been updated in a month: updated:<2026-03-29.